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If the Color gaps by type checkbox is selected, the gaps will be colored according to the annotation in the corresponding INSDC access for the sequence (i.e. annotation in the GenBank flat file record). Gaps of known length will be colored purple, gaps of unknown length will be colored reddish brown, and contaminants will be colored yellow. The color will appear as an extra line above the sequence track at low/high zoom levels and as a background color at the sequence level. 2b1af7f3a8